big-fish
develop

Preprocessing

  • I/O operations
  • Image preparation
  • Augmentation

Spot detection

  • Automated spot detection
  • Dense regions decomposition
  • Subpixel fitting
  • Cluster detection
  • Colocalization

Segmentation

  • Nucleus segmentation
  • Cell segmentation
  • Postprocessing

Analysis

  • Single-cell identification
  • Features engineering

Visualization

  • Field of view plot
  • Detection plot
  • Segmentation plot
  • Single-cell plot

Utils

  • Utility functions
big-fish
  • Search

© Copyright 2020, Arthur Imbert. Revision bbdf52e9.

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